Table of Contents
Norris Lab Software
chipSHARP
chipSHARP is a novel, easy-to-use web-based suite of software intended for analysis of microarray data. It has Gene Set Enrichment Analysis capability, coupled with false discovery analysis, using robust algorithms that are independent of data distribution. Importantly, in addition to capability to use a t-test approach to compare two conditions, it can compare multiple conditions using ANOVA or the novel ΔΔ statistic.
- If you are at the University of Iowa, please contact Andrew Norris to use chipSHARP.
- Elsewhere, you must contact Ron Kahn to determine your eligibility to obtain chipSHARP.
chipSHARP Patches
- patch2007jan31 - simple cosmetic fix
- patch2007feb01 - display result tables in html
- patch2007feb03 - *urgent* bug fix - error in job submission
- patch2007feb04 - elective patch to allow quick-track job submission
- patch2007feb07 - *urgent* bug fix - error in GSEAP computational engine
BPA
BPA is a novel method for the estimation of the False Negative Rate, as described in Norris & Kahn, PNAS 103:649.
- Contact Andrew Norris
